Single-cell epigenomic reconstruction of developmental trajectories in human neural organoid systems from pluripotency,
2024,
bioRxiv (accepted in Nat Neurosci)
Fides Zenk*
,
Jonas Simon Fleck*
,
Sophie Martina Johanna Jansen
,
Bijan Kashanian
,
Benedikt Eisinger
,
Małgorzata Santel
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Jean Dupre
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J. Gray Camp
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Barbara Treutlein
An integrated transcriptomic cell atlas of human neural organoids,
2023,
bioRxiv
Zhisong He*
,
Leander Dony*
,
Jonas Simon Fleck*
,
Artur Szałata
,
Katelyn X. Li
,
Irena Slišković
,
Hsiu-Chuan Lin
,
Malgorzata Santel
,
Alexander Atamian
,
Giorgia Quadrato
,
Jieran Sun
,
Sergiu P. Paşca
,
J. Gray Camp
,
Fabian Theis
,
Barbara Treutlein
Single-cell brain organoid screening identifies developmental defects in autism,
2023,
Nature
Chong Li*
,
Jonas Simon Fleck*
,
Catarina Martins-Costa
,
Thomas R. Burkard
,
Marlene Stuempflen
,
Ábel Vertesy
,
Angela Maria Peer
,
Christopher Esk
,
Ulrich Elling
,
Gregor Kasprian
,
Nina S. Corsini
,
Barbara Treutlein
,
Juergen A. Knoblich
What is a cell type?,
2023,
Science
Jonas Simon Fleck
,
J Gray Camp
,
Barbara Treutlein
Multimodal spatiotemporal phenotyping of human organoid development,
2023,
Nature Biotechnology
Philipp Wahle*
,
Giovanna Brancati*
,
Christoph Harmel*
,
Zhisong He*
,
Gabriele Gut
,
Aline Santos
,
Qianhui Yu
,
Pascal Noser
,
Jonas Simon Fleck
,
[...]
,
Lucas Pelkmans
,
Barbara Treutlein
,
J. Gray Camp
Inferring and perturbing cell fate regulomes in human brain organoids,
2022,
Nature
Jonas Simon Fleck*
,
Sophie Martina Johanna Jansen*
,
Damian Wollny
,
Fides Zenk
,
Makiko Seimiya
,
Akanksha Jain
,
Ryoko Okamoto
,
Malgorzata Santel
,
Zhisong He
,
J. Gray Camp
,
Barbara Treutlein
Single-cell analyses of axolotl telencephalon organization, neurogenesis, and regeneration,
2022,
Science
Katharina Lust*
,
Ashley Maynard*
,
Tomás Gomes*
,
Jonas Simon Fleck
,
J. Gray Camp
,
Elly M. Tanaka
,
Barbara Treutlein
Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases,
2022,
Cell Stem Cell
Jonas Simon Fleck*
,
Fátima Sanchís-Calleja*
,
Zhisong He
,
Malgorzata Santel
,
Michael James Boyle
,
J. Gray Camp
,
Barbara Treutlein
Accurate de novo identification of biosynthetic gene clusters with GECCO,
2021,
bioRxiv
Laura M. Carroll*
,
Martin Larralde*
,
Jonas Simon Fleck*
,
Ruby Ponnudurai
,
Alessio Milanese
,
Elisa Cappio
,
Georg Zeller
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer,
2019,
Nature Medicine
Jakob Wirbel*
,
Paul Theodor Pyl*
,
Ece Kartal
,
Konrad Zych
,
Alireza Kashani
,
Alessio Milanese
,
Jonas Simon Fleck
,
[...]
,
Peer Bork
,
Georg Zeller
Organoid single-cell genomic atlas uncovers human-specific features of brain development,
2019,
Nature
Sabina Kanton*
,
Michael James Boyle*
,
Zhisong He*
,
Malgorzata Santel
,
Anne Weigert
,
Fátima Sanchís-Calleja
,
Patricia Guijarro
,
Leila Sidow
,
Jonas Simon Fleck
,
[...]
,
Svante Pääbo
,
Barbara Treutlein
,
J. Gray Camp